No. words: 1151; after pruning: 1125


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.4 (1,1:559)  555  0.00 0.00 0.00  KSU008_H10_BQ168911At01P009F06F121F1_080.ab1        1   560 (18)  C KSU009_H10_BQ168911At01P009F06F121R1_080.ab1   (13)   560     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C KSU009_H10_BQ168911At01P009F06F121R1_080.ab1   573 
   17    KSU008_H10_BQ168911At01P009F06F121F1_080.ab1     4 
   21  C KSU009_H10_BQ168911At01P009F06F121R1_080.ab1   553 
   93    KSU008_H10_BQ168911At01P009F06F121F1_080.ab1    80 
   97  C KSU009_H10_BQ168911At01P009F06F121R1_080.ab1   477 
  125    KSU008_H10_BQ168911At01P009F06F121F1_080.ab1   112 
  129  C KSU009_H10_BQ168911At01P009F06F121R1_080.ab1   445 
  133    KSU008_H10_BQ168911At01P009F06F121F1_080.ab1   120 
  137  C KSU009_H10_BQ168911At01P009F06F121R1_080.ab1   437 
  161    KSU008_H10_BQ168911At01P009F06F121F1_080.ab1   148 
  169  C KSU009_H10_BQ168911At01P009F06F121R1_080.ab1   405 
  177    KSU008_H10_BQ168911At01P009F06F121F1_080.ab1   164 
  181  C KSU009_H10_BQ168911At01P009F06F121R1_080.ab1   393 
  205    KSU008_H10_BQ168911At01P009F06F121F1_080.ab1   192 
  213  C KSU009_H10_BQ168911At01P009F06F121R1_080.ab1   361 
  221    KSU008_H10_BQ168911At01P009F06F121F1_080.ab1   208 
  225  C KSU009_H10_BQ168911At01P009F06F121R1_080.ab1   349 
  241    KSU008_H10_BQ168911At01P009F06F121F1_080.ab1   228 
  249  C KSU009_H10_BQ168911At01P009F06F121R1_080.ab1   325 
  257    KSU008_H10_BQ168911At01P009F06F121F1_080.ab1   244 
  269  C KSU009_H10_BQ168911At01P009F06F121R1_080.ab1   305 
  297    KSU008_H10_BQ168911At01P009F06F121F1_080.ab1   284 
  301  C KSU009_H10_BQ168911At01P009F06F121R1_080.ab1   273 
  309    KSU008_H10_BQ168911At01P009F06F121F1_080.ab1   296 
  413  C KSU009_H10_BQ168911At01P009F06F121R1_080.ab1   161 
  445    KSU008_H10_BQ168911At01P009F06F121F1_080.ab1   432 
  453  C KSU009_H10_BQ168911At01P009F06F121R1_080.ab1   121 
  465    KSU008_H10_BQ168911At01P009F06F121F1_080.ab1   452 
  473  C KSU009_H10_BQ168911At01P009F06F121R1_080.ab1   101 
  481    KSU008_H10_BQ168911At01P009F06F121F1_080.ab1   468 
  489  C KSU009_H10_BQ168911At01P009F06F121R1_080.ab1    85 
  493    KSU008_H10_BQ168911At01P009F06F121F1_080.ab1   480 
Contig length: old 591, new 591

Contig length: old 591, new 591
New start: 0