No. words: 1180; after pruning: 1154


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 9.2 (1,1:436)  427  0.00 0.00 0.00  KSU043_D03_BQ168911Ld04P009F06F121F2_025.ab1        1   432 (165)  C KSU044_D03_BQ168911Ld04P009F06F121R2_025.ab1   (146)   437     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C KSU044_D03_BQ168911Ld04P009F06F121R2_025.ab1   583 
  218    KSU043_D03_BQ168911Ld04P009F06F121F2_025.ab1    72 
  238  C KSU044_D03_BQ168911Ld04P009F06F121R2_025.ab1   346 
  250    KSU043_D03_BQ168911Ld04P009F06F121F2_025.ab1   104 
  270  C KSU044_D03_BQ168911Ld04P009F06F121R2_025.ab1   314 
  298    KSU043_D03_BQ168911Ld04P009F06F121F2_025.ab1   152 
  338  C KSU044_D03_BQ168911Ld04P009F06F121R2_025.ab1   246 
  350    KSU043_D03_BQ168911Ld04P009F06F121F2_025.ab1   204 
  394  C KSU044_D03_BQ168911Ld04P009F06F121R2_025.ab1   190 
  414    KSU043_D03_BQ168911Ld04P009F06F121F2_025.ab1   268 
Contig length: old 743, new 743

Contig length: old 743, new 743
New start: 0