No. words: 1132; after pruning: 1106


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.2 (1,1:406)  398  0.00 0.00 0.25  KSU043_F03_BQ168911Ld06P009F06F121F2_021.ab1        1   407 (168)  C KSU044_F03_BQ168911Ld06P009F06F121R2_021.ab1   (151)   406     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  202 nodes

 103 str. conn. components

Path
    1  C KSU044_F03_BQ168911Ld06P009F06F121R2_021.ab1   557 
  351    KSU043_F03_BQ168911Ld06P009F06F121F2_021.ab1   200 
  395  C KSU044_F03_BQ168911Ld06P009F06F121R2_021.ab1   163 
  427    KSU043_F03_BQ168911Ld06P009F06F121F2_021.ab1   276 
Contig length: old 725, new 726

Contig length: old 726, new 726
New start: 0