No. words: 1061; after pruning: 1035


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:401)  397  0.00 0.25 0.00  MoSU005F_H09_BE352570Ld02P015G03G091F1_076.ab1        1   402 (136)  C MoSU005R_H09_BE352570Ld02P015G03G091R1_076.ab1   (120)   403     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1  C MoSU005R_H09_BE352570Ld02P015G03G091R1_076.ab1   523 
  285    MoSU005F_H09_BE352570Ld02P015G03G091F1_076.ab1   164 
  289  C MoSU005R_H09_BE352570Ld02P015G03G091R1_076.ab1   235 
  301    MoSU005F_H09_BE352570Ld02P015G03G091F1_076.ab1   180 
  309  C MoSU005R_H09_BE352570Ld02P015G03G091R1_076.ab1   215 
  333    MoSU005F_H09_BE352570Ld02P015G03G091F1_076.ab1   212 
  421  C MoSU005R_H09_BE352570Ld02P015G03G091R1_076.ab1   103 
  445    MoSU005F_H09_BE352570Ld02P015G03G091F1_076.ab1   324 
  453  C MoSU005R_H09_BE352570Ld02P015G03G091R1_076.ab1    71 
  457    MoSU005F_H09_BE352570Ld02P015G03G091F1_076.ab1   336 
  469  C MoSU005R_H09_BE352570Ld02P015G03G091R1_076.ab1    55 
  473    MoSU005F_H09_BE352570Ld02P015G03G091F1_076.ab1   352 
  489  C MoSU005R_H09_BE352570Ld02P015G03G091R1_076.ab1    35 
  493    MoSU005F_H09_BE352570Ld02P015G03G091F1_076.ab1   372 
Contig length: old 659, new 659

Contig length: old 659, new 659
New start: 0