No. words: 1364; after pruning: 1338


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 13.3 (1,1:641)  616  0.00 0.00 0.00  MoSU017F_G07_BE352570Td09P005A03P023B071F1_051.ab1        3   642 (45)  C MoSU017R_G07_BE352570Td09P005A03P023B071R1_051.ab1   (37)   640     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  322 nodes

 163 str. conn. components

Path
    1  C MoSU017R_G07_BE352570Td09P005A03P023B071R1_051.ab1   677 
   49    MoSU017F_G07_BE352570Td09P005A03P023B071F1_051.ab1    14 
   53  C MoSU017R_G07_BE352570Td09P005A03P023B071R1_051.ab1   625 
   89    MoSU017F_G07_BE352570Td09P005A03P023B071F1_051.ab1    54 
  105  C MoSU017R_G07_BE352570Td09P005A03P023B071R1_051.ab1   573 
  109    MoSU017F_G07_BE352570Td09P005A03P023B071F1_051.ab1    74 
  129  C MoSU017R_G07_BE352570Td09P005A03P023B071R1_051.ab1   549 
  137    MoSU017F_G07_BE352570Td09P005A03P023B071F1_051.ab1   102 
  145  C MoSU017R_G07_BE352570Td09P005A03P023B071R1_051.ab1   533 
  161    MoSU017F_G07_BE352570Td09P005A03P023B071F1_051.ab1   126 
  173  C MoSU017R_G07_BE352570Td09P005A03P023B071R1_051.ab1   505 
  185    MoSU017F_G07_BE352570Td09P005A03P023B071F1_051.ab1   150 
  217  C MoSU017R_G07_BE352570Td09P005A03P023B071R1_051.ab1   461 
  225    MoSU017F_G07_BE352570Td09P005A03P023B071F1_051.ab1   190 
  253  C MoSU017R_G07_BE352570Td09P005A03P023B071R1_051.ab1   425 
  257    MoSU017F_G07_BE352570Td09P005A03P023B071F1_051.ab1   222 
  265  C MoSU017R_G07_BE352570Td09P005A03P023B071R1_051.ab1   413 
  673    MoSU017F_G07_BE352570Td09P005A03P023B071F1_051.ab1   638 
Contig length: old 722, new 722

Contig length: old 722, new 722
New start: 0