No. words: 1725; after pruning: 1685


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:1274)  434  0.44 0.00 0.00  MoSU035F_F03_BE422954At02P019A04P019A101F1_021.ab1      444   893 (0)  C MoSU035R_F03_BE422954At02P019A04P019A101R1_021.ab1   (0)   832   383 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1    MoSU035F_F03_BE422954At02P019A04P019A101F1_021.ab1     1 
  551  C MoSU035R_F03_BE422954At02P019A04P019A101R1_021.ab1   725 
  559    MoSU035F_F03_BE422954At02P019A04P019A101F1_021.ab1   559 
  619  C MoSU035R_F03_BE422954At02P019A04P019A101R1_021.ab1   657 
  627    MoSU035F_F03_BE422954At02P019A04P019A101F1_021.ab1   627 
  635  C MoSU035R_F03_BE422954At02P019A04P019A101R1_021.ab1   641 
  643    MoSU035F_F03_BE422954At02P019A04P019A101F1_021.ab1   643 
  647  C MoSU035R_F03_BE422954At02P019A04P019A101R1_021.ab1   629 
  679    MoSU035F_F03_BE422954At02P019A04P019A101F1_021.ab1   679 
  687  C MoSU035R_F03_BE422954At02P019A04P019A101R1_021.ab1   589 
  703    MoSU035F_F03_BE422954At02P019A04P019A101F1_021.ab1   703 
  707  C MoSU035R_F03_BE422954At02P019A04P019A101R1_021.ab1   569 
Contig length: old 1275, new 1275

Contig length: old 1275, new 1275
New start: 0