No. words: 1019; after pruning: 993


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 10.0 (1,1:480)  461  0.00 0.00 0.00  MoSU026F_F12_BE442619Sn31P030E05P005H111F1_086.ab1        6   481 (50)  C MoSU026R_F12_BE442619Sn31P030E05P005H111R1_086.ab1   (12)   476     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C MoSU026R_F12_BE442619Sn31P030E05P005H111R1_086.ab1   488 
   48    MoSU026F_F12_BE442619Sn31P030E05P005H111F1_086.ab1    41 
   52  C MoSU026R_F12_BE442619Sn31P030E05P005H111R1_086.ab1   437 
   84    MoSU026F_F12_BE442619Sn31P030E05P005H111F1_086.ab1    77 
   88  C MoSU026R_F12_BE442619Sn31P030E05P005H111R1_086.ab1   401 
  112    MoSU026F_F12_BE442619Sn31P030E05P005H111F1_086.ab1   105 
Contig length: old 538, new 538

Contig length: old 538, new 538
New start: 0