No. words: 1339; after pruning: 1313


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.6 (1,1:627)  595  0.00 0.32 0.16  MoSU026F_F06_BE442619Ta22P005H05P030D061F1_038.ab1        1   628 (46)  C MoSU026R_F06_BE442619Ta22P005H05P030D061R1_038.ab1   (36)   629     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C MoSU026R_F06_BE442619Ta22P005H05P030D061R1_038.ab1   665 
   95    MoSU026F_F06_BE442619Ta22P005H05P030D061F1_038.ab1    57 
   99  C MoSU026R_F06_BE442619Ta22P005H05P030D061R1_038.ab1   567 
  135    MoSU026F_F06_BE442619Ta22P005H05P030D061F1_038.ab1    97 
  143  C MoSU026R_F06_BE442619Ta22P005H05P030D061R1_038.ab1   523 
  199    MoSU026F_F06_BE442619Ta22P005H05P030D061F1_038.ab1   161 
  243  C MoSU026R_F06_BE442619Ta22P005H05P030D061R1_038.ab1   423 
  661    MoSU026F_F06_BE442619Ta22P005H05P030D061F1_038.ab1   624 
Contig length: old 711, new 711

Contig length: old 711, new 712
New start: 0 
I Change at: 660; seg lengths: entry 1, contig 0