No. words: 1092; after pruning: 1066


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 7.7 (1,1:512)  452  1.95 0.20 0.20  MoSU005F_A07_BE442982Tu01P015C03C091F1_049.ab1        1   512 (51)  C MoSU005R_A07_BE442982Tu01P015C03C091R1_049.ab1   (16)   513     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C MoSU005R_A07_BE442982Tu01P015C03C091R1_049.ab1   529 
   45    MoSU005F_A07_BE442982Tu01P015C03C091F1_049.ab1    28 
Contig length: old 579, new 580

Contig length: old 580, new 580
New start: 0 
S Change at: 21; seg lengths: entry 1, contig 1