No. words: 1416; after pruning: 1390


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:555)  545  0.00 0.00 0.36  MoSU007F_D12_BE443312Ld07P015H05H111F1_090.ab1        1   557 (143)  C MoSU007R_D12_BE443312Ld07P015H05H111R1_090.ab1   (161)   555     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C MoSU007R_D12_BE443312Ld07P015H05H111R1_090.ab1   716 
  193    MoSU007F_D12_BE443312Ld07P015H05H111F1_090.ab1    32 
  197  C MoSU007R_D12_BE443312Ld07P015H05H111R1_090.ab1   520 
  237    MoSU007F_D12_BE443312Ld07P015H05H111F1_090.ab1    76 
  245  C MoSU007R_D12_BE443312Ld07P015H05H111R1_090.ab1   472 
  253    MoSU007F_D12_BE443312Ld07P015H05H111F1_090.ab1    92 
  261  C MoSU007R_D12_BE443312Ld07P015H05H111R1_090.ab1   456 
  265    MoSU007F_D12_BE443312Ld07P015H05H111F1_090.ab1   104 
Contig length: old 860, new 861

Contig length: old 861, new 861
New start: 0