No. words: 1476; after pruning: 1450


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 14.9 (1,1:691)  678  0.00 0.00 0.14  MoSU018F_G03_BE443312Ta23P023A08P005H091F1_019.ab1        1   690 (34)  C MoSU018R_G03_BE443312Ta23P023A08P005H091R1_019.ab1   (61)   691     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  344 nodes

 174 str. conn. components

Path
    1  C MoSU018R_G03_BE443312Ta23P023A08P005H091R1_019.ab1   752 
   65    MoSU018F_G03_BE443312Ta23P023A08P005H091F1_019.ab1     4 
   85  C MoSU018R_G03_BE443312Ta23P023A08P005H091R1_019.ab1   668 
   97    MoSU018F_G03_BE443312Ta23P023A08P005H091F1_019.ab1    36 
  193  C MoSU018R_G03_BE443312Ta23P023A08P005H091R1_019.ab1   560 
  197    MoSU018F_G03_BE443312Ta23P023A08P005H091F1_019.ab1   136 
  305  C MoSU018R_G03_BE443312Ta23P023A08P005H091R1_019.ab1   448 
  309    MoSU018F_G03_BE443312Ta23P023A08P005H091F1_019.ab1   248 
  505  C MoSU018R_G03_BE443312Ta23P023A08P005H091R1_019.ab1   248 
  509    MoSU018F_G03_BE443312Ta23P023A08P005H091F1_019.ab1   448 
  529  C MoSU018R_G03_BE443312Ta23P023A08P005H091R1_019.ab1   224 
  533    MoSU018F_G03_BE443312Ta23P023A08P005H091F1_019.ab1   472 
  553  C MoSU018R_G03_BE443312Ta23P023A08P005H091R1_019.ab1   200 
  573    MoSU018F_G03_BE443312Ta23P023A08P005H091F1_019.ab1   512 
  613  C MoSU018R_G03_BE443312Ta23P023A08P005H091R1_019.ab1   140 
  617    MoSU018F_G03_BE443312Ta23P023A08P005H091F1_019.ab1   556 
  621  C MoSU018R_G03_BE443312Ta23P023A08P005H091R1_019.ab1   132 
  629    MoSU018F_G03_BE443312Ta23P023A08P005H091F1_019.ab1   568 
  637  C MoSU018R_G03_BE443312Ta23P023A08P005H091R1_019.ab1   116 
  649    MoSU018F_G03_BE443312Ta23P023A08P005H091F1_019.ab1   588 
  653  C MoSU018R_G03_BE443312Ta23P023A08P005H091R1_019.ab1   100 
  665    MoSU018F_G03_BE443312Ta23P023A08P005H091F1_019.ab1   604 
  669  C MoSU018R_G03_BE443312Ta23P023A08P005H091R1_019.ab1    84 
  747    MoSU018F_G03_BE443312Ta23P023A08P005H091F1_019.ab1   687 
Contig length: old 784, new 784

Contig length: old 784, new 784
New start: 0