No. words: 1498; after pruning: 1444


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:736)  711  0.41 0.14 0.14  MoSU034F_E01_BE446359At01P018A01P018A071F1_007.ab1        1   727 (0)  C MoSU034R_E01_BE446359At01P018A01P018A071R1_007.ab1   (34)   737    11 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1  C MoSU034R_E01_BE446359At01P018A01P018A071R1_007.ab1   771 
   58    MoSU034F_E01_BE446359At01P018A01P018A071F1_007.ab1    23 
   62  C MoSU034R_E01_BE446359At01P018A01P018A071R1_007.ab1   710 
   74    MoSU034F_E01_BE446359At01P018A01P018A071F1_007.ab1    39 
   78  C MoSU034R_E01_BE446359At01P018A01P018A071R1_007.ab1   694 
   82    MoSU034F_E01_BE446359At01P018A01P018A071F1_007.ab1    47 
   90  C MoSU034R_E01_BE446359At01P018A01P018A071R1_007.ab1   682 
   94    MoSU034F_E01_BE446359At01P018A01P018A071F1_007.ab1    59 
  110  C MoSU034R_E01_BE446359At01P018A01P018A071R1_007.ab1   662 
  114    MoSU034F_E01_BE446359At01P018A01P018A071F1_007.ab1    79 
  118  C MoSU034R_E01_BE446359At01P018A01P018A071R1_007.ab1   654 
  330    MoSU034F_E01_BE446359At01P018A01P018A071F1_007.ab1   295 
  334  C MoSU034R_E01_BE446359At01P018A01P018A071R1_007.ab1   438 
  398    MoSU034F_E01_BE446359At01P018A01P018A071F1_007.ab1   363 
  406  C MoSU034R_E01_BE446359At01P018A01P018A071R1_007.ab1   366 
  474    MoSU034F_E01_BE446359At01P018A01P018A071F1_007.ab1   439 
  526  C MoSU034R_E01_BE446359At01P018A01P018A071R1_007.ab1   246 
  602    MoSU034F_E01_BE446359At01P018A01P018A071F1_007.ab1   567 
  634  C MoSU034R_E01_BE446359At01P018A01P018A071R1_007.ab1   138 
  646    MoSU034F_E01_BE446359At01P018A01P018A071F1_007.ab1   611 
  654  C MoSU034R_E01_BE446359At01P018A01P018A071R1_007.ab1   118 
  674    MoSU034F_E01_BE446359At01P018A01P018A071F1_007.ab1   639 
  686  C MoSU034R_E01_BE446359At01P018A01P018A071R1_007.ab1    86 
  711    MoSU034F_E01_BE446359At01P018A01P018A071F1_007.ab1   676 
  727  C MoSU034R_E01_BE446359At01P018A01P018A071R1_007.ab1    45 
  747    MoSU034F_E01_BE446359At01P018A01P018A071F1_007.ab1   712 
  751  C MoSU034R_E01_BE446359At01P018A01P018A071R1_007.ab1    21 
Contig length: old 771, new 771

Contig length: old 771, new 772
New start: 0 
I Change at: 757; seg lengths: entry 1, contig 0