No. words: 1512; after pruning: 1486


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 12.7 (1,1:727)  688  0.00 0.14 0.00  MoSU021F_E08_BE446380Ta13P020B11P005G111F1_056.ab1        4   722 (30)  C MoSU021R_E08_BE446380Ta13P020B11P005G111R1_056.ab1   (34)   726     7 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  356 nodes

 180 str. conn. components

Path
    1  C MoSU021R_E08_BE446380Ta13P020B11P005G111R1_056.ab1   760 
   70    MoSU021F_E08_BE446380Ta13P020B11P005G111F1_056.ab1    38 
   78  C MoSU021R_E08_BE446380Ta13P020B11P005G111R1_056.ab1   683 
   82    MoSU021F_E08_BE446380Ta13P020B11P005G111F1_056.ab1    50 
  102  C MoSU021R_E08_BE446380Ta13P020B11P005G111R1_056.ab1   659 
  106    MoSU021F_E08_BE446380Ta13P020B11P005G111F1_056.ab1    74 
  114  C MoSU021R_E08_BE446380Ta13P020B11P005G111R1_056.ab1   647 
  118    MoSU021F_E08_BE446380Ta13P020B11P005G111F1_056.ab1    86 
  126  C MoSU021R_E08_BE446380Ta13P020B11P005G111R1_056.ab1   635 
  154    MoSU021F_E08_BE446380Ta13P020B11P005G111F1_056.ab1   122 
  162  C MoSU021R_E08_BE446380Ta13P020B11P005G111R1_056.ab1   599 
  170    MoSU021F_E08_BE446380Ta13P020B11P005G111F1_056.ab1   138 
  258  C MoSU021R_E08_BE446380Ta13P020B11P005G111R1_056.ab1   503 
  266    MoSU021F_E08_BE446380Ta13P020B11P005G111F1_056.ab1   234 
  282  C MoSU021R_E08_BE446380Ta13P020B11P005G111R1_056.ab1   479 
  322    MoSU021F_E08_BE446380Ta13P020B11P005G111F1_056.ab1   290 
  550  C MoSU021R_E08_BE446380Ta13P020B11P005G111R1_056.ab1   211 
  634    MoSU021F_E08_BE446380Ta13P020B11P005G111F1_056.ab1   602 
  650  C MoSU021R_E08_BE446380Ta13P020B11P005G111R1_056.ab1   111 
  658    MoSU021F_E08_BE446380Ta13P020B11P005G111F1_056.ab1   626 
  670  C MoSU021R_E08_BE446380Ta13P020B11P005G111R1_056.ab1    91 
  706    MoSU021F_E08_BE446380Ta13P020B11P005G111F1_056.ab1   674 
Contig length: old 784, new 784

Contig length: old 784, new 784
New start: 0