No. words: 1135; after pruning: 1109


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:542)  524  0.18 0.00 0.00  MoSU002F_C03_BE471272As01P005B03B091F1_018.ab1        1   543 (21)  C MoSU002R_C03_BE471272As01P005B03B091R1_018.ab1   (28)   543     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1  C MoSU002R_C03_BE471272As01P005B03B091R1_018.ab1   571 
   74    MoSU002F_C03_BE471272As01P005B03B091F1_018.ab1    46 
  102  C MoSU002R_C03_BE471272As01P005B03B091R1_018.ab1   470 
  134    MoSU002F_C03_BE471272As01P005B03B091F1_018.ab1   106 
  138  C MoSU002R_C03_BE471272As01P005B03B091R1_018.ab1   434 
  162    MoSU002F_C03_BE471272As01P005B03B091F1_018.ab1   134 
  166  C MoSU002R_C03_BE471272As01P005B03B091R1_018.ab1   406 
  182    MoSU002F_C03_BE471272As01P005B03B091F1_018.ab1   154 
  186  C MoSU002R_C03_BE471272As01P005B03B091R1_018.ab1   386 
  214    MoSU002F_C03_BE471272As01P005B03B091F1_018.ab1   186 
  222  C MoSU002R_C03_BE471272As01P005B03B091R1_018.ab1   350 
  290    MoSU002F_C03_BE471272As01P005B03B091F1_018.ab1   262 
  342  C MoSU002R_C03_BE471272As01P005B03B091R1_018.ab1   230 
  414    MoSU002F_C03_BE471272As01P005B03B091F1_018.ab1   386 
  430  C MoSU002R_C03_BE471272As01P005B03B091R1_018.ab1   142 
  462    MoSU002F_C03_BE471272As01P005B03B091F1_018.ab1   434 
  470  C MoSU002R_C03_BE471272As01P005B03B091R1_018.ab1   102 
  506    MoSU002F_C03_BE471272As01P005B03B091F1_018.ab1   478 
  538  C MoSU002R_C03_BE471272As01P005B03B091R1_018.ab1    34 
  542    MoSU002F_C03_BE471272As01P005B03B091F1_018.ab1   514 
Contig length: old 592, new 592

Contig length: old 592, new 592
New start: 0