No. words: 1326; after pruning: 1300


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.5 (1,1:711)  602  0.33 0.00 0.00  MoSU006F_A05_BE471272Tu01P015D04D101F1_033.ab1       31   644 (0)  C MoSU006R_A05_BE471272Tu01P015D04D101R1_033.ab1   (0)   682    69 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1    MoSU006F_A05_BE471272Tu01P015D04D101F1_033.ab1     1 
  439  C MoSU006R_A05_BE471272Tu01P015D04D101R1_033.ab1   274 
  455    MoSU006F_A05_BE471272Tu01P015D04D101F1_033.ab1   455 
  467  C MoSU006R_A05_BE471272Tu01P015D04D101R1_033.ab1   246 
  491    MoSU006F_A05_BE471272Tu01P015D04D101F1_033.ab1   491 
  499  C MoSU006R_A05_BE471272Tu01P015D04D101R1_033.ab1   214 
  503    MoSU006F_A05_BE471272Tu01P015D04D101F1_033.ab1   503 
  507  C MoSU006R_A05_BE471272Tu01P015D04D101R1_033.ab1   206 
  571    MoSU006F_A05_BE471272Tu01P015D04D101F1_033.ab1   571 
  575  C MoSU006R_A05_BE471272Tu01P015D04D101R1_033.ab1   138 
Contig length: old 712, new 712

Contig length: old 712, new 712
New start: 0