No. words: 1016; after pruning: 990


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 4.2 (1,1:338)  319  0.00 0.30 0.30  MoSU014F_H03_BE488496Ld02P018B03P018B091F1_017.ab1        5   339 (176)  C MoSU014R_H03_BE488496Ld02P018B03P018B091R1_017.ab1   (166)   335     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  162 nodes

 83 str. conn. components

Path
    1  C MoSU014R_H03_BE488496Ld02P018B03P018B091R1_017.ab1   501 
  287    MoSU014F_H03_BE488496Ld02P018B03P018B091F1_017.ab1   124 
  295  C MoSU014R_H03_BE488496Ld02P018B03P018B091R1_017.ab1   207 
  299    MoSU014F_H03_BE488496Ld02P018B03P018B091F1_017.ab1   136 
  331  C MoSU014R_H03_BE488496Ld02P018B03P018B091R1_017.ab1   171 
  343    MoSU014F_H03_BE488496Ld02P018B03P018B091F1_017.ab1   180 
  403  C MoSU014R_H03_BE488496Ld02P018B03P018B091R1_017.ab1    99 
  411    MoSU014F_H03_BE488496Ld02P018B03P018B091F1_017.ab1   248 
  447  C MoSU014R_H03_BE488496Ld02P018B03P018B091R1_017.ab1    55 
  455    MoSU014F_H03_BE488496Ld02P018B03P018B091F1_017.ab1   292 
Contig length: old 677, new 678

Contig length: old 678, new 678
New start: 0