No. words: 1711; after pruning: 1685


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 10.1 (1,1:719)  643  1.82 0.00 0.28  MoSU022F_F01_BE488670Ld02P005F04P005F101F1_005.ab1        1   714 (138)  C MoSU022R_F01_BE488670Ld02P005F04P005F101R1_005.ab1   (141)   718     7 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C MoSU022R_F01_BE488670Ld02P005F04P005F101R1_005.ab1   859 
  167    MoSU022F_F01_BE488670Ld02P005F04P005F101F1_005.ab1    26 
  842  C MoSU022R_F01_BE488670Ld02P005F04P005F101R1_005.ab1    20 
  850    MoSU022F_F01_BE488670Ld02P005F04P005F101F1_005.ab1   709 
Contig length: old 991, new 993

Contig length: old 993, new 993
New start: 0 
S Change at: 152; seg lengths: entry 1, contig 1
S Change at: 157; seg lengths: entry 1, contig 1
S Change at: 163; seg lengths: entry 1, contig 1