No. words: 881; after pruning: 855


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 7.2 (1,1:401)  390  0.00 0.00 0.50  MoSU027F_F08_BE493897Ta14P018F01P030D111F1_054.ab1        1   401 (34)  C MoSU027R_F08_BE493897Ta14P018F01P030D111R1_054.ab1   (45)   401     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  196 nodes

 100 str. conn. components

Path
    1  C MoSU027R_F08_BE493897Ta14P018F01P030D111R1_054.ab1   446 
  249    MoSU027F_F08_BE493897Ta14P018F01P030D111F1_054.ab1   204 
  257  C MoSU027R_F08_BE493897Ta14P018F01P030D111R1_054.ab1   190 
  273    MoSU027F_F08_BE493897Ta14P018F01P030D111F1_054.ab1   228 
  353  C MoSU027R_F08_BE493897Ta14P018F01P030D111R1_054.ab1    94 
  385    MoSU027F_F08_BE493897Ta14P018F01P030D111F1_054.ab1   340 
  393  C MoSU027R_F08_BE493897Ta14P018F01P030D111R1_054.ab1    54 
  401    MoSU027F_F08_BE493897Ta14P018F01P030D111F1_054.ab1   356 
Contig length: old 479, new 480

Contig length: old 480, new 480
New start: 0