No. words: 1203; after pruning: 1177


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:567)  541  0.18 0.35 0.35  MoSU033F_D07_BE494028Td04P015F02P024E111F1_057.ab1        1   568 (34)  C MoSU033R_D07_BE494028Td04P015F02P024E111R1_057.ab1   (32)   569     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1  C MoSU033R_D07_BE494028Td04P015F02P024E111R1_057.ab1   601 
   63    MoSU033F_D07_BE494028Td04P015F02P024E111F1_057.ab1    29 
   96  C MoSU033R_D07_BE494028Td04P015F02P024E111R1_057.ab1   506 
  112    MoSU033F_D07_BE494028Td04P015F02P024E111F1_057.ab1    78 
  124  C MoSU033R_D07_BE494028Td04P015F02P024E111R1_057.ab1   478 
  228    MoSU033F_D07_BE494028Td04P015F02P024E111F1_057.ab1   194 
  256  C MoSU033R_D07_BE494028Td04P015F02P024E111R1_057.ab1   346 
  276    MoSU033F_D07_BE494028Td04P015F02P024E111F1_057.ab1   242 
  280  C MoSU033R_D07_BE494028Td04P015F02P024E111R1_057.ab1   322 
  344    MoSU033F_D07_BE494028Td04P015F02P024E111F1_057.ab1   310 
  380  C MoSU033R_D07_BE494028Td04P015F02P024E111R1_057.ab1   222 
  436    MoSU033F_D07_BE494028Td04P015F02P024E111F1_057.ab1   402 
  464  C MoSU033R_D07_BE494028Td04P015F02P024E111R1_057.ab1   138 
  496    MoSU033F_D07_BE494028Td04P015F02P024E111F1_057.ab1   462 
  504  C MoSU033R_D07_BE494028Td04P015F02P024E111R1_057.ab1    98 
  512    MoSU033F_D07_BE494028Td04P015F02P024E111F1_057.ab1   478 
  540  C MoSU033R_D07_BE494028Td04P015F02P024E111R1_057.ab1    62 
  548    MoSU033F_D07_BE494028Td04P015F02P024E111F1_057.ab1   514 
  560  C MoSU033R_D07_BE494028Td04P015F02P024E111R1_057.ab1    42 
  564    MoSU033F_D07_BE494028Td04P015F02P024E111F1_057.ab1   530 
Contig length: old 635, new 636

Contig length: old 636, new 636
New start: 0