No. words: 1641; after pruning: 1615


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 13.7 (1,1:722)  704  0.14 0.28 0.00  MoSU035F_G05_BE495325Ld01P019C04P019C101F1_035.ab1        1   720 (50)  C MoSU035R_G05_BE495325Ld01P019C04P019C101R1_035.ab1   (147)   724     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1  C MoSU035R_G05_BE495325Ld01P019C04P019C101R1_035.ab1   871 
  178    MoSU035F_G05_BE495325Ld01P019C04P019C101F1_035.ab1    29 
  182  C MoSU035R_G05_BE495325Ld01P019C04P019C101R1_035.ab1   690 
  186    MoSU035F_G05_BE495325Ld01P019C04P019C101F1_035.ab1    37 
  190  C MoSU035R_G05_BE495325Ld01P019C04P019C101R1_035.ab1   682 
  207    MoSU035F_G05_BE495325Ld01P019C04P019C101F1_035.ab1    58 
  219  C MoSU035R_G05_BE495325Ld01P019C04P019C101R1_035.ab1   653 
  223    MoSU035F_G05_BE495325Ld01P019C04P019C101F1_035.ab1    74 
  231  C MoSU035R_G05_BE495325Ld01P019C04P019C101R1_035.ab1   641 
  395    MoSU035F_G05_BE495325Ld01P019C04P019C101F1_035.ab1   246 
  399  C MoSU035R_G05_BE495325Ld01P019C04P019C101R1_035.ab1   473 
  819    MoSU035F_G05_BE495325Ld01P019C04P019C101F1_035.ab1   670 
  823  C MoSU035R_G05_BE495325Ld01P019C04P019C101R1_035.ab1    49 
  863    MoSU035F_G05_BE495325Ld01P019C04P019C101F1_035.ab1   714 
Contig length: old 918, new 919

Contig length: old 919, new 919
New start: 0