No. words: 1012; after pruning: 986


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 6.0 (1,1:346)  336  0.00 0.00 0.29  MoSU007F_D06_BE497999Ld06P015E04E101F1_042.ab1        5   347 (161)  C MoSU007R_D06_BE497999Ld06P015E04E101R1_042.ab1   (162)   342     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  172 nodes

 88 str. conn. components

Path
    1  C MoSU007R_D06_BE497999Ld06P015E04E101R1_042.ab1   504 
  338    MoSU007F_D06_BE497999Ld06P015E04E101F1_042.ab1   180 
Contig length: old 665, new 666

Contig length: old 666, new 666
New start: 0