No. words: 1013; after pruning: 987


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 6.8 (1,1:457)  435  0.00 0.22 0.00  MoSU002F_B07_BE498418Tu02P005C04C101F1_057.ab1        9   458 (16)  C MoSU002R_B07_BE498418Tu02P005C04C101R1_057.ab1   (88)   451     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1  C MoSU002R_B07_BE498418Tu02P005C04C101R1_057.ab1   539 
  120    MoSU002F_B07_BE498418Tu02P005C04C101F1_057.ab1    39 
  128  C MoSU002R_B07_BE498418Tu02P005C04C101R1_057.ab1   412 
  132    MoSU002F_B07_BE498418Tu02P005C04C101F1_057.ab1    51 
  136  C MoSU002R_B07_BE498418Tu02P005C04C101R1_057.ab1   404 
  160    MoSU002F_B07_BE498418Tu02P005C04C101F1_057.ab1    79 
  164  C MoSU002R_B07_BE498418Tu02P005C04C101R1_057.ab1   376 
  172    MoSU002F_B07_BE498418Tu02P005C04C101F1_057.ab1    91 
  188  C MoSU002R_B07_BE498418Tu02P005C04C101R1_057.ab1   352 
  192    MoSU002F_B07_BE498418Tu02P005C04C101F1_057.ab1   111 
  204  C MoSU002R_B07_BE498418Tu02P005C04C101R1_057.ab1   336 
  208    MoSU002F_B07_BE498418Tu02P005C04C101F1_057.ab1   127 
  216  C MoSU002R_B07_BE498418Tu02P005C04C101R1_057.ab1   324 
  220    MoSU002F_B07_BE498418Tu02P005C04C101F1_057.ab1   139 
  240  C MoSU002R_B07_BE498418Tu02P005C04C101R1_057.ab1   300 
  252    MoSU002F_B07_BE498418Tu02P005C04C101F1_057.ab1   171 
  256  C MoSU002R_B07_BE498418Tu02P005C04C101R1_057.ab1   284 
  260    MoSU002F_B07_BE498418Tu02P005C04C101F1_057.ab1   179 
  432  C MoSU002R_B07_BE498418Tu02P005C04C101R1_057.ab1   108 
  436    MoSU002F_B07_BE498418Tu02P005C04C101F1_057.ab1   355 
Contig length: old 555, new 555

Contig length: old 555, new 555
New start: 0