No. words: 1377; after pruning: 1351


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 12.9 (1,1:651)  630  0.15 0.15 0.15  MoSU008F_C01_BE590476As02P005C01C071F1_011.ab1        1   650 (50)  C MoSU008R_C01_BE590476As02P005C01C071R1_011.ab1   (25)   652     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  318 nodes

 161 str. conn. components

Path
    1  C MoSU008R_C01_BE590476As02P005C01C071R1_011.ab1   677 
   39    MoSU008F_C01_BE590476As02P005C01C071F1_011.ab1    13 
  254  C MoSU008R_C01_BE590476As02P005C01C071R1_011.ab1   424 
  302    MoSU008F_C01_BE590476As02P005C01C071F1_011.ab1   276 
  378  C MoSU008R_C01_BE590476As02P005C01C071R1_011.ab1   300 
  402    MoSU008F_C01_BE590476As02P005C01C071F1_011.ab1   376 
  430  C MoSU008R_C01_BE590476As02P005C01C071R1_011.ab1   248 
  438    MoSU008F_C01_BE590476As02P005C01C071F1_011.ab1   412 
  446  C MoSU008R_C01_BE590476As02P005C01C071R1_011.ab1   232 
  462    MoSU008F_C01_BE590476As02P005C01C071F1_011.ab1   436 
  474  C MoSU008R_C01_BE590476As02P005C01C071R1_011.ab1   204 
  486    MoSU008F_C01_BE590476As02P005C01C071F1_011.ab1   460 
  494  C MoSU008R_C01_BE590476As02P005C01C071R1_011.ab1   184 
  666    MoSU008F_C01_BE590476As02P005C01C071F1_011.ab1   640 
Contig length: old 725, new 726

Contig length: old 726, new 726
New start: 0