No. words: 1376; after pruning: 1350


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 13.2 (1,1:650)  634  0.00 0.00 0.15  MoSU008F_E01_BE590476At02P005C01C071F1_007.ab1        4   651 (33)  C MoSU008R_E01_BE590476At02P005C01C071R1_007.ab1   (45)   647     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C MoSU008R_E01_BE590476At02P005C01C071R1_007.ab1   692 
   57    MoSU008F_E01_BE590476At02P005C01C071F1_007.ab1    15 
  129  C MoSU008R_E01_BE590476At02P005C01C071R1_007.ab1   564 
  133    MoSU008F_E01_BE590476At02P005C01C071F1_007.ab1    91 
  533  C MoSU008R_E01_BE590476At02P005C01C071R1_007.ab1   160 
  553    MoSU008F_E01_BE590476At02P005C01C071F1_007.ab1   511 
  557  C MoSU008R_E01_BE590476At02P005C01C071R1_007.ab1   136 
  661    MoSU008F_E01_BE590476At02P005C01C071F1_007.ab1   619 
Contig length: old 725, new 726

Contig length: old 726, new 726
New start: 0