No. words: 1121; after pruning: 1095


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 7.0 (1,1:525)  457  1.52 0.76 0.95  MoSU025F_H03_BE590476Sn24P030A01P005C071F1_017.ab1        4   528 (39)  C MoSU025R_H03_BE590476Sn24P030A01P005C071R1_017.ab1   (30)   524     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C MoSU025R_H03_BE590476Sn24P030A01P005C071R1_017.ab1   554 
  165    MoSU025F_H03_BE590476Sn24P030A01P005C071F1_017.ab1   136 
  193  C MoSU025R_H03_BE590476Sn24P030A01P005C071R1_017.ab1   362 
  209    MoSU025F_H03_BE590476Sn24P030A01P005C071F1_017.ab1   180 
  417  C MoSU025R_H03_BE590476Sn24P030A01P005C071R1_017.ab1   138 
  425    MoSU025F_H03_BE590476Sn24P030A01P005C071F1_017.ab1   396 
Contig length: old 595, new 596

Contig length: old 596, new 596
New start: 0