No. words: 1357; after pruning: 1331


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:632)  612  0.00 0.32 0.32  MoSU013F_B08_BE591127Ld04P018A02P018A081F1_062.ab1        1   634 (68)  C MoSU013R_B08_BE591127Ld04P018A02P018A081R1_062.ab1   (21)   634     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C MoSU013R_B08_BE591127Ld04P018A02P018A081R1_062.ab1   655 
   37    MoSU013F_B08_BE591127Ld04P018A02P018A081F1_062.ab1    16 
   74  C MoSU013R_B08_BE591127Ld04P018A02P018A081R1_062.ab1   580 
   78    MoSU013F_B08_BE591127Ld04P018A02P018A081F1_062.ab1    57 
  126  C MoSU013R_B08_BE591127Ld04P018A02P018A081R1_062.ab1   528 
  134    MoSU013F_B08_BE591127Ld04P018A02P018A081F1_062.ab1   113 
  166  C MoSU013R_B08_BE591127Ld04P018A02P018A081R1_062.ab1   488 
  174    MoSU013F_B08_BE591127Ld04P018A02P018A081F1_062.ab1   153 
  486  C MoSU013R_B08_BE591127Ld04P018A02P018A081R1_062.ab1   168 
  538    MoSU013F_B08_BE591127Ld04P018A02P018A081F1_062.ab1   517 
  574  C MoSU013R_B08_BE591127Ld04P018A02P018A081R1_062.ab1    80 
  582    MoSU013F_B08_BE591127Ld04P018A02P018A081F1_062.ab1   561 
  590  C MoSU013R_B08_BE591127Ld04P018A02P018A081R1_062.ab1    64 
  610    MoSU013F_B08_BE591127Ld04P018A02P018A081F1_062.ab1   589 
  625  C MoSU013R_B08_BE591127Ld04P018A02P018A081R1_062.ab1    30 
  641    MoSU013F_B08_BE591127Ld04P018A02P018A081F1_062.ab1   620 
Contig length: old 724, new 723

Contig length: old 723, new 725
New start: 0 
I Change at: 46; seg lengths: entry 1, contig 0
I Change at: 60; seg lengths: entry 1, contig 0