No. words: 1285; after pruning: 1245


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:606)  577  0.49 0.33 0.33  MoSU013F_C08_BE591127Ld05P018A02P018A081F1_060.ab1        1   607 (66)  C MoSU013R_C08_BE591127Ld05P018A02P018A081R1_060.ab1   (4)   608     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1    MoSU013F_C08_BE591127Ld05P018A02P018A081F1_060.ab1     1 
  446  C MoSU013R_C08_BE591127Ld05P018A02P018A081R1_060.ab1   161 
  470    MoSU013F_C08_BE591127Ld05P018A02P018A081F1_060.ab1   470 
  478  C MoSU013R_C08_BE591127Ld05P018A02P018A081R1_060.ab1   129 
  486    MoSU013F_C08_BE591127Ld05P018A02P018A081F1_060.ab1   486 
  510  C MoSU013R_C08_BE591127Ld05P018A02P018A081R1_060.ab1    97 
  514    MoSU013F_C08_BE591127Ld05P018A02P018A081F1_060.ab1   514 
  530  C MoSU013R_C08_BE591127Ld05P018A02P018A081R1_060.ab1    77 
  538    MoSU013F_C08_BE591127Ld05P018A02P018A081F1_060.ab1   538 
Contig length: old 678, new 673

Contig length: old 673, new 674
New start: 0 
I Change at: 24; seg lengths: entry 1, contig 0
S Change at: 607; seg lengths: entry 1, contig 1