No. words: 462; after pruning: 436


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    3   -0.2 -0.2 (1,1:174)  143  1.74 0.00 1.16  MoSU029F_D09_BE591305Sn30P005A01P023H121F1_073.ab1        1   172 (52)  C MoSU029R_D09_BE591305Sn30P005A01P023H121R1_073.ab1   (64)   174     5 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.2       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  74 nodes

 39 str. conn. components

Path
    1  C MoSU029R_D09_BE591305Sn30P005A01P023H121R1_073.ab1   238 
  104    MoSU029F_D09_BE591305Sn30P005A01P023H121F1_073.ab1    40 
  112  C MoSU029R_D09_BE591305Sn30P005A01P023H121R1_073.ab1   127 
  124    MoSU029F_D09_BE591305Sn30P005A01P023H121F1_073.ab1    60 
  172  C MoSU029R_D09_BE591305Sn30P005A01P023H121R1_073.ab1    67 
  176    MoSU029F_D09_BE591305Sn30P005A01P023H121F1_073.ab1   112 
Contig length: old 287, new 288

Contig length: old 288, new 288
New start: 0