No. words: 389; after pruning: 363


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 2.0 (1,1:156)  139  0.00 0.00 0.67  MoSU020F_D06_BE591996Ta20P020E02P005G071F1_042.ab1        6   155 (40)  C MoSU020R_D06_BE591996Ta20P020E02P005G071R1_042.ab1   (43)   151     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  74 nodes

 39 str. conn. components

Path
    1  C MoSU020R_D06_BE591996Ta20P020E02P005G071R1_042.ab1   194 
   91    MoSU020F_D06_BE591996Ta20P020E02P005G071F1_042.ab1    53 
   95  C MoSU020R_D06_BE591996Ta20P020E02P005G071R1_042.ab1   100 
  111    MoSU020F_D06_BE591996Ta20P020E02P005G071F1_042.ab1    73 
  115  C MoSU020R_D06_BE591996Ta20P020E02P005G071R1_042.ab1    80 
  147    MoSU020F_D06_BE591996Ta20P020E02P005G071F1_042.ab1   109 
  151  C MoSU020R_D06_BE591996Ta20P020E02P005G071R1_042.ab1    44 
  159    MoSU020F_D06_BE591996Ta20P020E02P005G071F1_042.ab1   121 
  175  C MoSU020R_D06_BE591996Ta20P020E02P005G071R1_042.ab1    20 
  179    MoSU020F_D06_BE591996Ta20P020E02P005G071F1_042.ab1   141 
Contig length: old 232, new 233

Contig length: old 233, new 233
New start: 0