No. words: 1339; after pruning: 1313


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.2 (1,1:640)  628  0.00 0.00 0.00  MoSU004F_C03_BE605054As01P005E03E091F1_018.ab1        1   641 (29)  C MoSU004R_C03_BE605054As01P005E03E091R1_018.ab1   (28)   641     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  322 nodes

 163 str. conn. components

Path
    1  C MoSU004R_C03_BE605054As01P005E03E091R1_018.ab1   669 
   32    MoSU004F_C03_BE605054As01P005E03E091F1_018.ab1     4 
   36  C MoSU004R_C03_BE605054As01P005E03E091R1_018.ab1   634 
   48    MoSU004F_C03_BE605054As01P005E03E091F1_018.ab1    20 
   52  C MoSU004R_C03_BE605054As01P005E03E091R1_018.ab1   618 
   64    MoSU004F_C03_BE605054As01P005E03E091F1_018.ab1    36 
   76  C MoSU004R_C03_BE605054As01P005E03E091R1_018.ab1   594 
   84    MoSU004F_C03_BE605054As01P005E03E091F1_018.ab1    56 
  104  C MoSU004R_C03_BE605054As01P005E03E091R1_018.ab1   566 
  112    MoSU004F_C03_BE605054As01P005E03E091F1_018.ab1    84 
  156  C MoSU004R_C03_BE605054As01P005E03E091R1_018.ab1   514 
  160    MoSU004F_C03_BE605054As01P005E03E091F1_018.ab1   132 
  184  C MoSU004R_C03_BE605054As01P005E03E091R1_018.ab1   486 
  188    MoSU004F_C03_BE605054As01P005E03E091F1_018.ab1   160 
  292  C MoSU004R_C03_BE605054As01P005E03E091R1_018.ab1   378 
  320    MoSU004F_C03_BE605054As01P005E03E091F1_018.ab1   292 
  376  C MoSU004R_C03_BE605054As01P005E03E091R1_018.ab1   294 
  384    MoSU004F_C03_BE605054As01P005E03E091F1_018.ab1   356 
  388  C MoSU004R_C03_BE605054As01P005E03E091R1_018.ab1   282 
  392    MoSU004F_C03_BE605054As01P005E03E091F1_018.ab1   364 
  404  C MoSU004R_C03_BE605054As01P005E03E091R1_018.ab1   266 
  424    MoSU004F_C03_BE605054As01P005E03E091F1_018.ab1   396 
  428  C MoSU004R_C03_BE605054As01P005E03E091R1_018.ab1   242 
  444    MoSU004F_C03_BE605054As01P005E03E091F1_018.ab1   416 
  448  C MoSU004R_C03_BE605054As01P005E03E091R1_018.ab1   222 
  548    MoSU004F_C03_BE605054As01P005E03E091F1_018.ab1   520 
  552  C MoSU004R_C03_BE605054As01P005E03E091R1_018.ab1   118 
  564    MoSU004F_C03_BE605054As01P005E03E091F1_018.ab1   536 
  568  C MoSU004R_C03_BE605054As01P005E03E091R1_018.ab1   102 
  580    MoSU004F_C03_BE605054As01P005E03E091F1_018.ab1   552 
  584  C MoSU004R_C03_BE605054As01P005E03E091R1_018.ab1    86 
  620    MoSU004F_C03_BE605054As01P005E03E091F1_018.ab1   592 
  640  C MoSU004R_C03_BE605054As01P005E03E091R1_018.ab1    30 
  652    MoSU004F_C03_BE605054As01P005E03E091F1_018.ab1   624 
Contig length: old 698, new 698

Contig length: old 698, new 698
New start: 0