No. words: 958; after pruning: 932


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:442)  428  0.00 0.23 0.00  MoSU025F_C04_BF201560Td03P030A04P005G101F1_028.ab1        1   443 (52)  C MoSU025R_C04_BF201560Td03P030A04P005G101R1_028.ab1   (19)   444     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C MoSU025R_C04_BF201560Td03P030A04P005G101R1_028.ab1   463 
   30    MoSU025F_C04_BF201560Td03P030A04P005G101F1_028.ab1    10 
   90  C MoSU025R_C04_BF201560Td03P030A04P005G101R1_028.ab1   374 
  210    MoSU025F_C04_BF201560Td03P030A04P005G101F1_028.ab1   190 
  238  C MoSU025R_C04_BF201560Td03P030A04P005G101R1_028.ab1   226 
  322    MoSU025F_C04_BF201560Td03P030A04P005G101F1_028.ab1   302 
  338  C MoSU025R_C04_BF201560Td03P030A04P005G101R1_028.ab1   126 
  362    MoSU025F_C04_BF201560Td03P030A04P005G101F1_028.ab1   342 
Contig length: old 515, new 515

Contig length: old 515, new 515
New start: 0