No. words: 1255; after pruning: 1229


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.3 (1,1:572)  548  0.35 0.17 0.00  MoSU011F_E04_BF201699Td04P005G02P020D071F1_024.ab1        1   573 (65)  C MoSU011R_E04_BF201699Td04P005G02P020D071R1_024.ab1   (43)   574     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C MoSU011R_E04_BF201699Td04P005G02P020D071R1_024.ab1   617 
  120    MoSU011F_E04_BF201699Td04P005G02P020D071F1_024.ab1    76 
  140  C MoSU011R_E04_BF201699Td04P005G02P020D071R1_024.ab1   478 
  176    MoSU011F_E04_BF201699Td04P005G02P020D071F1_024.ab1   132 
  184  C MoSU011R_E04_BF201699Td04P005G02P020D071R1_024.ab1   434 
  488    MoSU011F_E04_BF201699Td04P005G02P020D071F1_024.ab1   444 
  492  C MoSU011R_E04_BF201699Td04P005G02P020D071R1_024.ab1   126 
  520    MoSU011F_E04_BF201699Td04P005G02P020D071F1_024.ab1   476 
  528  C MoSU011R_E04_BF201699Td04P005G02P020D071R1_024.ab1    90 
  536    MoSU011F_E04_BF201699Td04P005G02P020D071F1_024.ab1   492 
  556  C MoSU011R_E04_BF201699Td04P005G02P020D071R1_024.ab1    62 
  560    MoSU011F_E04_BF201699Td04P005G02P020D071F1_024.ab1   516 
Contig length: old 682, new 682

Contig length: old 682, new 682
New start: 0