No. words: 1281; after pruning: 1255


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.7 (1,1:596)  578  0.00 0.34 0.00  MoSU021F_H04_BF201699Td08P005G02P020C081F1_018.ab1        1   596 (46)  C MoSU021R_H04_BF201699Td08P005G02P020C081R1_018.ab1   (41)   598     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C MoSU021R_H04_BF201699Td08P005G02P020C081R1_018.ab1   639 
  224    MoSU021F_H04_BF201699Td08P005G02P020C081F1_018.ab1   181 
  236  C MoSU021R_H04_BF201699Td08P005G02P020C081R1_018.ab1   404 
  256    MoSU021F_H04_BF201699Td08P005G02P020C081F1_018.ab1   213 
  260  C MoSU021R_H04_BF201699Td08P005G02P020C081R1_018.ab1   380 
  284    MoSU021F_H04_BF201699Td08P005G02P020C081F1_018.ab1   241 
  292  C MoSU021R_H04_BF201699Td08P005G02P020C081R1_018.ab1   348 
  312    MoSU021F_H04_BF201699Td08P005G02P020C081F1_018.ab1   269 
  328  C MoSU021R_H04_BF201699Td08P005G02P020C081R1_018.ab1   312 
  340    MoSU021F_H04_BF201699Td08P005G02P020C081F1_018.ab1   297 
  348  C MoSU021R_H04_BF201699Td08P005G02P020C081R1_018.ab1   292 
  352    MoSU021F_H04_BF201699Td08P005G02P020C081F1_018.ab1   309 
  368  C MoSU021R_H04_BF201699Td08P005G02P020C081R1_018.ab1   272 
  372    MoSU021F_H04_BF201699Td08P005G02P020C081F1_018.ab1   329 
  392  C MoSU021R_H04_BF201699Td08P005G02P020C081R1_018.ab1   248 
  400    MoSU021F_H04_BF201699Td08P005G02P020C081F1_018.ab1   357 
  404  C MoSU021R_H04_BF201699Td08P005G02P020C081R1_018.ab1   236 
  480    MoSU021F_H04_BF201699Td08P005G02P020C081F1_018.ab1   437 
  492  C MoSU021R_H04_BF201699Td08P005G02P020C081R1_018.ab1   148 
  496    MoSU021F_H04_BF201699Td08P005G02P020C081F1_018.ab1   453 
  540  C MoSU021R_H04_BF201699Td08P005G02P020C081R1_018.ab1   100 
  548    MoSU021F_H04_BF201699Td08P005G02P020C081F1_018.ab1   505 
  616  C MoSU021R_H04_BF201699Td08P005G02P020C081R1_018.ab1    24 
  620    MoSU021F_H04_BF201699Td08P005G02P020C081F1_018.ab1   577 
Contig length: old 684, new 685

Contig length: old 685, new 685
New start: 0