No. words: 678; after pruning: 652


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 3.5 (1,1:309)  257  3.56 0.00 0.32  MoSU024F_E07_BF293421At01P019F03P019F091F1_055.ab1        1   309 (18)  C MoSU024R_E07_BF293421At01P019F03P019F091R1_055.ab1   (42)   309     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  118 nodes

 61 str. conn. components

Path
    1  C MoSU024R_E07_BF293421At01P019F03P019F091R1_055.ab1   351 
   48    MoSU024F_E07_BF293421At01P019F03P019F091F1_055.ab1     6 
   69  C MoSU024R_E07_BF293421At01P019F03P019F091R1_055.ab1   283 
   85    MoSU024F_E07_BF293421At01P019F03P019F091F1_055.ab1    43 
   89  C MoSU024R_E07_BF293421At01P019F03P019F091R1_055.ab1   263 
  117    MoSU024F_E07_BF293421At01P019F03P019F091F1_055.ab1    75 
  125  C MoSU024R_E07_BF293421At01P019F03P019F091R1_055.ab1   227 
  129    MoSU024F_E07_BF293421At01P019F03P019F091F1_055.ab1    87 
  143  C MoSU024R_E07_BF293421At01P019F03P019F091R1_055.ab1   209 
  336    MoSU024F_E07_BF293421At01P019F03P019F091F1_055.ab1   294 
Contig length: old 368, new 369

Contig length: old 369, new 369
New start: 0 
S Change at: 139; seg lengths: entry 1, contig 1