No. words: 1639; after pruning: 1613


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.1 (1,1:1007)  614  0.00 0.16 0.00  MoSU010F_B07_BF428955Tu02P018B02P018B081F1_061.ab1      232   861 (0)  C MoSU010R_B07_BF428955Tu02P018B02P018B081R1_061.ab1   (0)   778   148 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1    MoSU010F_B07_BF428955Tu02P018B02P018B081F1_061.ab1     1 
  439  C MoSU010R_B07_BF428955Tu02P018B02P018B081R1_061.ab1   571 
  443    MoSU010F_B07_BF428955Tu02P018B02P018B081F1_061.ab1   443 
  491  C MoSU010R_B07_BF428955Tu02P018B02P018B081R1_061.ab1   519 
  515    MoSU010F_B07_BF428955Tu02P018B02P018B081F1_061.ab1   515 
  523  C MoSU010R_B07_BF428955Tu02P018B02P018B081R1_061.ab1   487 
Contig length: old 1008, new 1009

Contig length: old 1009, new 1009
New start: 0