No. words: 1002; after pruning: 976


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:475)  464  0.00 0.21 0.21  MoSU006F_F09_BF474966At02P015C05C111F1_075.ab1        1   476 (13)  C MoSU006R_F09_BF474966At02P015C05C111R1_075.ab1   (37)   476     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C MoSU006R_F09_BF474966At02P015C05C111R1_075.ab1   513 
   52    MoSU006F_F09_BF474966At02P015C05C111F1_075.ab1    14 
   96  C MoSU006R_F09_BF474966At02P015C05C111R1_075.ab1   418 
  100    MoSU006F_F09_BF474966At02P015C05C111F1_075.ab1    62 
  108  C MoSU006R_F09_BF474966At02P015C05C111R1_075.ab1   406 
  116    MoSU006F_F09_BF474966At02P015C05C111F1_075.ab1    78 
  124  C MoSU006R_F09_BF474966At02P015C05C111R1_075.ab1   390 
  128    MoSU006F_F09_BF474966At02P015C05C111F1_075.ab1    90 
  136  C MoSU006R_F09_BF474966At02P015C05C111R1_075.ab1   378 
  148    MoSU006F_F09_BF474966At02P015C05C111F1_075.ab1   110 
  184  C MoSU006R_F09_BF474966At02P015C05C111R1_075.ab1   330 
  196    MoSU006F_F09_BF474966At02P015C05C111F1_075.ab1   158 
  212  C MoSU006R_F09_BF474966At02P015C05C111R1_075.ab1   302 
  216    MoSU006F_F09_BF474966At02P015C05C111F1_075.ab1   178 
  240  C MoSU006R_F09_BF474966At02P015C05C111R1_075.ab1   274 
  244    MoSU006F_F09_BF474966At02P015C05C111F1_075.ab1   206 
  256  C MoSU006R_F09_BF474966At02P015C05C111R1_075.ab1   258 
  308    MoSU006F_F09_BF474966At02P015C05C111F1_075.ab1   270 
  316  C MoSU006R_F09_BF474966At02P015C05C111R1_075.ab1   198 
  320    MoSU006F_F09_BF474966At02P015C05C111F1_075.ab1   282 
  380  C MoSU006R_F09_BF474966At02P015C05C111R1_075.ab1   134 
  384    MoSU006F_F09_BF474966At02P015C05C111F1_075.ab1   346 
Contig length: old 526, new 527

Contig length: old 527, new 527
New start: 0