No. words: 1240; after pruning: 1214


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:490)  479  0.00 0.20 0.20  MoSU006F_G09_BF474966Ld01P015C05C111F1_068.ab1        1   491 (125)  C MoSU006R_G09_BF474966Ld01P015C05C111R1_068.ab1   (133)   491     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C MoSU006R_G09_BF474966Ld01P015C05C111R1_068.ab1   624 
  168    MoSU006F_G09_BF474966Ld01P015C05C111F1_068.ab1    34 
  180  C MoSU006R_G09_BF474966Ld01P015C05C111R1_068.ab1   445 
  184    MoSU006F_G09_BF474966Ld01P015C05C111F1_068.ab1    50 
  204  C MoSU006R_G09_BF474966Ld01P015C05C111R1_068.ab1   421 
  212    MoSU006F_G09_BF474966Ld01P015C05C111F1_068.ab1    78 
  220  C MoSU006R_G09_BF474966Ld01P015C05C111R1_068.ab1   405 
  228    MoSU006F_G09_BF474966Ld01P015C05C111F1_068.ab1    94 
  236  C MoSU006R_G09_BF474966Ld01P015C05C111R1_068.ab1   389 
  240    MoSU006F_G09_BF474966Ld01P015C05C111F1_068.ab1   106 
  248  C MoSU006R_G09_BF474966Ld01P015C05C111R1_068.ab1   377 
  256    MoSU006F_G09_BF474966Ld01P015C05C111F1_068.ab1   122 
  268  C MoSU006R_G09_BF474966Ld01P015C05C111R1_068.ab1   357 
  304    MoSU006F_G09_BF474966Ld01P015C05C111F1_068.ab1   170 
  308  C MoSU006R_G09_BF474966Ld01P015C05C111R1_068.ab1   317 
  312    MoSU006F_G09_BF474966Ld01P015C05C111F1_068.ab1   178 
  320  C MoSU006R_G09_BF474966Ld01P015C05C111R1_068.ab1   305 
  324    MoSU006F_G09_BF474966Ld01P015C05C111F1_068.ab1   190 
  408  C MoSU006R_G09_BF474966Ld01P015C05C111R1_068.ab1   217 
  416    MoSU006F_G09_BF474966Ld01P015C05C111F1_068.ab1   282 
Contig length: old 749, new 750

Contig length: old 750, new 750
New start: 0