No. words: 1589; after pruning: 1549


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.3 (1,1:740)  664  0.70 0.00 0.28  MoSU034F_A04_BF482529Ld03P019G01P019G071F1_032.ab1       27   743 (131)  C MoSU034R_A04_BF482529Ld03P019G01P019G071R1_032.ab1   (0)   715     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1    MoSU034F_A04_BF482529Ld03P019G01P019G071F1_032.ab1     1 
   42  C MoSU034R_A04_BF482529Ld03P019G01P019G071R1_032.ab1   700 
   56    MoSU034F_A04_BF482529Ld03P019G01P019G071F1_032.ab1    56 
   84  C MoSU034R_A04_BF482529Ld03P019G01P019G071R1_032.ab1   658 
   95    MoSU034F_A04_BF482529Ld03P019G01P019G071F1_032.ab1    95 
  431  C MoSU034R_A04_BF482529Ld03P019G01P019G071R1_032.ab1   311 
  435    MoSU034F_A04_BF482529Ld03P019G01P019G071F1_032.ab1   435 
  503  C MoSU034R_A04_BF482529Ld03P019G01P019G071R1_032.ab1   239 
  507    MoSU034F_A04_BF482529Ld03P019G01P019G071F1_032.ab1   507 
  551  C MoSU034R_A04_BF482529Ld03P019G01P019G071R1_032.ab1   191 
  555    MoSU034F_A04_BF482529Ld03P019G01P019G071F1_032.ab1   555 
  567  C MoSU034R_A04_BF482529Ld03P019G01P019G071R1_032.ab1   175 
  591    MoSU034F_A04_BF482529Ld03P019G01P019G071F1_032.ab1   591 
  639  C MoSU034R_A04_BF482529Ld03P019G01P019G071R1_032.ab1   103 
  643    MoSU034F_A04_BF482529Ld03P019G01P019G071F1_032.ab1   643 
Contig length: old 874, new 874

Contig length: old 874, new 874
New start: 0