No. words: 1728; after pruning: 1657


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:1101)  570  1.28 0.48 0.16  MoSU034F_C05_BF485401As01P019A02P019A081F1_043.ab1      346   970 (0)  C MoSU034R_C05_BF485401As01P019A02P019A081R1_043.ab1   (0)   758   132 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1    MoSU034F_C05_BF485401As01P019A02P019A081F1_043.ab1     1 
  463  C MoSU034R_C05_BF485401As01P019A02P019A081R1_043.ab1   641 
  467    MoSU034F_C05_BF485401As01P019A02P019A081F1_043.ab1   467 
  495  C MoSU034R_C05_BF485401As01P019A02P019A081R1_043.ab1   609 
  511    MoSU034F_C05_BF485401As01P019A02P019A081F1_043.ab1   511 
  523  C MoSU034R_C05_BF485401As01P019A02P019A081R1_043.ab1   581 
  531    MoSU034F_C05_BF485401As01P019A02P019A081F1_043.ab1   531 
  567  C MoSU034R_C05_BF485401As01P019A02P019A081R1_043.ab1   537 
  571    MoSU034F_C05_BF485401As01P019A02P019A081F1_043.ab1   571 
  607  C MoSU034R_C05_BF485401As01P019A02P019A081R1_043.ab1   497 
  611    MoSU034F_C05_BF485401As01P019A02P019A081F1_043.ab1   611 
  631  C MoSU034R_C05_BF485401As01P019A02P019A081R1_043.ab1   473 
  639    MoSU034F_C05_BF485401As01P019A02P019A081F1_043.ab1   639 
  659  C MoSU034R_C05_BF485401As01P019A02P019A081R1_043.ab1   445 
  663    MoSU034F_C05_BF485401As01P019A02P019A081F1_043.ab1   663 
  671  C MoSU034R_C05_BF485401As01P019A02P019A081R1_043.ab1   433 
  723    MoSU034F_C05_BF485401As01P019A02P019A081F1_043.ab1   723 
  727  C MoSU034R_C05_BF485401As01P019A02P019A081R1_043.ab1   377 
Contig length: old 1102, new 1103

Contig length: old 1103, new 1103
New start: 0 
S Change at: 310; seg lengths: entry 1, contig 1