No. words: 1558; after pruning: 1518


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.8 (1,1:1449)   97  1.85 0.00 0.93  MoSU034F_A06_BF485401Ld03P019A02P019A081F1_048.ab1      614   721 (0)  C MoSU034R_A06_BF485401Ld03P019A02P019A081R1_048.ab1   (0)   837   731 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  46 nodes

 25 str. conn. components

Path
    1    MoSU034F_A06_BF485401Ld03P019A02P019A081F1_048.ab1     1 
  617  C MoSU034R_A06_BF485401Ld03P019A02P019A081R1_048.ab1   834 
  631    MoSU034F_A06_BF485401Ld03P019A02P019A081F1_048.ab1   631 
  639  C MoSU034R_A06_BF485401Ld03P019A02P019A081R1_048.ab1   812 
  648    MoSU034F_A06_BF485401Ld03P019A02P019A081F1_048.ab1   648 
  652  C MoSU034R_A06_BF485401Ld03P019A02P019A081R1_048.ab1   799 
  668    MoSU034F_A06_BF485401Ld03P019A02P019A081F1_048.ab1   668 
  672  C MoSU034R_A06_BF485401Ld03P019A02P019A081R1_048.ab1   779 
Contig length: old 1450, new 1450

Contig length: old 1450, new 1450
New start: 0