No. words: 1134; after pruning: 1094


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:508)  481  0.98 0.00 0.20  MoSU034F_C11_BG274853As01P019H01P019H071F1_091.ab1        1   509 (54)  C MoSU034R_C11_BG274853As01P019H01P019H071R1_091.ab1   (63)   508     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1  C MoSU034R_C11_BG274853As01P019H01P019H071R1_091.ab1   571 
  224    MoSU034F_C11_BG274853As01P019H01P019H071F1_091.ab1   161 
  228  C MoSU034R_C11_BG274853As01P019H01P019H071R1_091.ab1   344 
  236    MoSU034F_C11_BG274853As01P019H01P019H071F1_091.ab1   173 
  240  C MoSU034R_C11_BG274853As01P019H01P019H071R1_091.ab1   332 
  509    MoSU034F_C11_BG274853As01P019H01P019H071F1_091.ab1   446 
  517  C MoSU034R_C11_BG274853As01P019H01P019H071R1_091.ab1    55 
  521    MoSU034F_C11_BG274853As01P019H01P019H071F1_091.ab1   458 
Contig length: old 625, new 626

Contig length: old 626, new 626
New start: 0