No. words: 1025; after pruning: 999


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.8 (1,1:374)  361  0.00 0.00 0.53  MoSU004F_G02_BG604857Ld09P005B02B081F1_008.ab1        1   376 (136)  C MoSU004R_G02_BG604857Ld09P005B02B081R1_008.ab1   (139)   374     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  182 nodes

 93 str. conn. components

Path
    1  C MoSU004R_G02_BG604857Ld09P005B02B081R1_008.ab1   513 
  231    MoSU004F_G02_BG604857Ld09P005B02B081F1_008.ab1    92 
  235  C MoSU004R_G02_BG604857Ld09P005B02B081R1_008.ab1   279 
  287    MoSU004F_G02_BG604857Ld09P005B02B081F1_008.ab1   148 
  291  C MoSU004R_G02_BG604857Ld09P005B02B081R1_008.ab1   223 
  315    MoSU004F_G02_BG604857Ld09P005B02B081F1_008.ab1   176 
  327  C MoSU004R_G02_BG604857Ld09P005B02B081R1_008.ab1   187 
  331    MoSU004F_G02_BG604857Ld09P005B02B081F1_008.ab1   192 
  395  C MoSU004R_G02_BG604857Ld09P005B02B081R1_008.ab1   119 
  399    MoSU004F_G02_BG604857Ld09P005B02B081F1_008.ab1   260 
Contig length: old 650, new 651

Contig length: old 651, new 651
New start: 0