No. words: 789; after pruning: 763


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 2.1 (1,1:232)  219  0.00 0.00 0.44  MoSU023F_G04_BQ160417Ld09P019B02P019B081F1_020.ab1        5   232 (176)  C MoSU023R_G04_BQ160417Ld09P019B02P019B081R1_020.ab1   (153)   228     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  114 nodes

 59 str. conn. components

Path
    1  C MoSU023R_G04_BQ160417Ld09P019B02P019B081R1_020.ab1   381 
  213    MoSU023F_G04_BQ160417Ld09P019B02P019B081F1_020.ab1    64 
  217  C MoSU023R_G04_BQ160417Ld09P019B02P019B081R1_020.ab1   165 
  229    MoSU023F_G04_BQ160417Ld09P019B02P019B081F1_020.ab1    80 
  233  C MoSU023R_G04_BQ160417Ld09P019B02P019B081R1_020.ab1   149 
  265    MoSU023F_G04_BQ160417Ld09P019B02P019B081F1_020.ab1   116 
Contig length: old 556, new 557

Contig length: old 557, new 557
New start: 0