No. words: 1076; after pruning: 1050


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:396)  378  0.00 0.00 0.00  MoSU004F_C08_CD454870Ld05P005E06E121F1_054.ab1        1   397 (140)  C MoSU004R_C08_CD454870Ld05P005E06E121R1_054.ab1   (142)   397     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1  C MoSU004R_C08_CD454870Ld05P005E06E121R1_054.ab1   539 
  318    MoSU004F_C08_CD454870Ld05P005E06E121F1_054.ab1   176 
  330  C MoSU004R_C08_CD454870Ld05P005E06E121R1_054.ab1   210 
  362    MoSU004F_C08_CD454870Ld05P005E06E121F1_054.ab1   220 
  418  C MoSU004R_C08_CD454870Ld05P005E06E121R1_054.ab1   122 
  422    MoSU004F_C08_CD454870Ld05P005E06E121F1_054.ab1   280 
Contig length: old 679, new 679

Contig length: old 679, new 679
New start: 0