No. words: 1093; after pruning: 1067


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:400)  381  0.00 0.00 0.25  MoSU004F_H08_CD454870Ld10P005E06E121F1_064.ab1        1   401 (146)  C MoSU004R_H08_CD454870Ld10P005E06E121R1_064.ab1   (146)   400     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1  C MoSU004R_H08_CD454870Ld10P005E06E121R1_064.ab1   546 
  254    MoSU004F_H08_CD454870Ld10P005E06E121F1_064.ab1   108 
  258  C MoSU004R_H08_CD454870Ld10P005E06E121R1_064.ab1   289 
  310    MoSU004F_H08_CD454870Ld10P005E06E121F1_064.ab1   164 
  314  C MoSU004R_H08_CD454870Ld10P005E06E121R1_064.ab1   233 
  370    MoSU004F_H08_CD454870Ld10P005E06E121F1_064.ab1   224 
Contig length: old 692, new 693

Contig length: old 693, new 693
New start: 0