No. words: 1593; after pruning: 1567


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 14.1 (1,1:797)  768  0.26 0.13 0.00  UCD002F_C04_BE312718LD02P001B02B081F1_022.ab1        5   788 (0)  C UCD002R_C04_BE312718LD02P001B02B081R1_022.ab1   (10)   795    11 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  384 nodes

 194 str. conn. components

Path
    1  C UCD002R_C04_BE312718LD02P001B02B081R1_022.ab1   805 
   14    UCD002F_C04_BE312718LD02P001B02B081F1_022.ab1     8 
   27  C UCD002R_C04_BE312718LD02P001B02B081R1_022.ab1   778 
   31    UCD002F_C04_BE312718LD02P001B02B081F1_022.ab1    25 
  240  C UCD002R_C04_BE312718LD02P001B02B081R1_022.ab1   565 
  248    UCD002F_C04_BE312718LD02P001B02B081F1_022.ab1   242 
  296  C UCD002R_C04_BE312718LD02P001B02B081R1_022.ab1   509 
  300    UCD002F_C04_BE312718LD02P001B02B081F1_022.ab1   294 
  308  C UCD002R_C04_BE312718LD02P001B02B081R1_022.ab1   497 
  312    UCD002F_C04_BE312718LD02P001B02B081F1_022.ab1   306 
  348  C UCD002R_C04_BE312718LD02P001B02B081R1_022.ab1   457 
  356    UCD002F_C04_BE312718LD02P001B02B081F1_022.ab1   350 
  380  C UCD002R_C04_BE312718LD02P001B02B081R1_022.ab1   425 
  460    UCD002F_C04_BE312718LD02P001B02B081F1_022.ab1   454 
  464  C UCD002R_C04_BE312718LD02P001B02B081R1_022.ab1   341 
  776    UCD002F_C04_BE312718LD02P001B02B081F1_022.ab1   770 
  784  C UCD002R_C04_BE312718LD02P001B02B081R1_022.ab1    21 
Contig length: old 805, new 804

Contig length: old 804, new 805
New start: 0 
I Change at: 22; seg lengths: entry 1, contig 0