No. words: 1354; after pruning: 1328


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.3 (1,1:770)  574  0.34 0.00 0.00  UCD002F_E03_BE312718TU02P001B02B081F1_019.ab1      177   759 (0)  C UCD002R_E03_BE312718TU02P001B02B081R1_019.ab1   (0)   595    13 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1    UCD002F_E03_BE312718TU02P001B02B081F1_019.ab1     1 
  374  C UCD002R_E03_BE312718TU02P001B02B081R1_019.ab1   398 
  378    UCD002F_E03_BE312718TU02P001B02B081F1_019.ab1   378 
  382  C UCD002R_E03_BE312718TU02P001B02B081R1_019.ab1   390 
  390    UCD002F_E03_BE312718TU02P001B02B081F1_019.ab1   390 
  394  C UCD002R_E03_BE312718TU02P001B02B081R1_019.ab1   378 
  398    UCD002F_E03_BE312718TU02P001B02B081F1_019.ab1   398 
  433  C UCD002R_E03_BE312718TU02P001B02B081R1_019.ab1   339 
  437    UCD002F_E03_BE312718TU02P001B02B081F1_019.ab1   437 
  441  C UCD002R_E03_BE312718TU02P001B02B081R1_019.ab1   331 
  461    UCD002F_E03_BE312718TU02P001B02B081F1_019.ab1   461 
  473  C UCD002R_E03_BE312718TU02P001B02B081R1_019.ab1   299 
Contig length: old 771, new 771

Contig length: old 771, new 771
New start: 0