No. words: 1011; after pruning: 959


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    0    0.0 0.5 (1,1:262)  117  1.55 0.78 0.00  UCD011F_G01_BE398302Sn25P025F03P012D081F1_003.ab1        2   130 (0)  C UCD011R_G01_BE398302Sn25P025F03P012D081R1_003.ab1   (28)   263   134 *

Pass: 1
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.8 (2,1:262)  287  0.34 0.00 0.00  UCD011R_G01_BE398302Sn25P025F03P012D081R1_003.ab1        1   291 (0)    UCD021R_A02_BE398302Sn25P025F03P012D081R2_016.ab1        1   291 (8) *
Merge:(0)    2    0.0 5.1 (3,1:12)  248  0.00 0.00 0.00  UCD021R_A02_BE398302Sn25P025F03P012D081R2_016.ab1        3   251 (48)  C UCD021F_A02_BE398302Sn25P025F03P012D081F2_016.ab1   (42)   249     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 2       1        0

Offset
  0       5 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  554 nodes

 148 str. conn. components

Path
    1  C UCD021R_A02_BE398302Sn25P025F03P012D081R2_016.ab1   299 
  104  C UCD011R_G01_BE398302Sn25P025F03P012D081R1_003.ab1   196 
  114  C UCD021R_A02_BE398302Sn25P025F03P012D081R2_016.ab1   186 
  137  C UCD011R_G01_BE398302Sn25P025F03P012D081R1_003.ab1   163 
  153  C UCD021R_A02_BE398302Sn25P025F03P012D081R2_016.ab1   147 
  157  C UCD011R_G01_BE398302Sn25P025F03P012D081R1_003.ab1   143 
  204  C UCD021R_A02_BE398302Sn25P025F03P012D081R2_016.ab1    96 
  208  C UCD011R_G01_BE398302Sn25P025F03P012D081R1_003.ab1    92 
  234    UCD021F_A02_BE398302Sn25P025F03P012D081F2_016.ab1   186 
  244  C UCD011R_G01_BE398302Sn25P025F03P012D081R1_003.ab1    56 
  272  C UCD021R_A02_BE398302Sn25P025F03P012D081R2_016.ab1    28 
  276  C UCD011R_G01_BE398302Sn25P025F03P012D081R1_003.ab1    24 
  282    UCD021F_A02_BE398302Sn25P025F03P012D081F2_016.ab1   234 
  284  C UCD011R_G01_BE398302Sn25P025F03P012D081R1_003.ab1    16 
  288    UCD021F_A02_BE398302Sn25P025F03P012D081F2_016.ab1   240 
Contig length: old 339, new 339

Contig length: old 339, new 339
New start: 0