No. words: 1076; after pruning: 1024


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    0    0.0 3.6 (1,1:-100)  177  1.09 0.00 0.00  UCD011F_A02_BE398302Sn31P025F03P012D081F1_016.ab1        1   184 (0)    UCD021R_C02_BE398302Sn31P025F03P012D081R2_012.ab1      101   284 (11) *

Pass: 1
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.2 (2,1:-100)  281  0.00 0.68 0.34  UCD021R_C02_BE398302Sn31P025F03P012D081R2_012.ab1        2   295 (0)    UCD011R_A02_BE398302Sn31P025F03P012D081R1_016.ab1        1   295 (14) *
Merge:(0)    1    0.0 4.7 (3,1:147)  241  0.00 0.41 0.00  UCD021R_C02_BE398302Sn31P025F03P012D081R2_012.ab1        3   247 (48)  C UCD021F_C02_BE398302Sn31P025F03P012D081F2_012.ab1   (41)   247     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 1       1        0

Offset
  0       4 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  618 nodes

 231 str. conn. components

Path
    1  C UCD021F_C02_BE398302Sn31P025F03P012D081F2_012.ab1   288 
   63    UCD011R_A02_BE398302Sn31P025F03P012D081R1_016.ab1    23 
   66    UCD021R_C02_BE398302Sn31P025F03P012D081R2_012.ab1    26 
   70    UCD011R_A02_BE398302Sn31P025F03P012D081R1_016.ab1    30 
   75  C UCD021F_C02_BE398302Sn31P025F03P012D081F2_012.ab1   214 
   77    UCD021R_C02_BE398302Sn31P025F03P012D081R2_012.ab1    37 
   78    UCD011R_A02_BE398302Sn31P025F03P012D081R1_016.ab1    38 
   86    UCD021R_C02_BE398302Sn31P025F03P012D081R2_012.ab1    46 
   89  C UCD021F_C02_BE398302Sn31P025F03P012D081F2_012.ab1   200 
   91    UCD011R_A02_BE398302Sn31P025F03P012D081R1_016.ab1    51 
  162    UCD021R_C02_BE398302Sn31P025F03P012D081R2_012.ab1   122 
  164    UCD011R_A02_BE398302Sn31P025F03P012D081R1_016.ab1   124 
  216    UCD021R_C02_BE398302Sn31P025F03P012D081R2_012.ab1   176 
  218    UCD011R_A02_BE398302Sn31P025F03P012D081R1_016.ab1   178 
  286    UCD021R_C02_BE398302Sn31P025F03P012D081R2_012.ab1   246 
  294    UCD011R_A02_BE398302Sn31P025F03P012D081R1_016.ab1   254 
  317    UCD021R_C02_BE398302Sn31P025F03P012D081R2_012.ab1   277 
  318    UCD011R_A02_BE398302Sn31P025F03P012D081R1_016.ab1   278 
Contig length: old 349, new 349

Contig length: old 349, new 349
New start: 0