No. words: 566; after pruning: 540


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
 -308  -255  0 1    172     E -171- 0
Fail: (1)  172   -1.3 -1.3 (1,1:255)   74  1.19 0.00 1.19  UCD010F_H10_BE398302Td02P025F03P012D081F1_066.ab1        1    84 (173)  C UCD020R_H10_BE398302Td02P025F03P012D081R2_066.ab1   (54)   255   173  
Merge:(0)   99   -1.4 -1.4 (1,1:0)   98 10.76 0.00 0.63  UCD010F_H10_BE398302Td02P025F03P012D081F1_066.ab1      100   257 (0)    UCD020R_H10_BE398302Td02P025F03P012D081R2_066.ab1      100   256 (53) *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.3       0        1
-1.4       1        0

Gap   # merges  # failures
 size
99       1        0
172       0        1

Offset
  0       2 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  44 nodes

 24 str. conn. components

Path
    1    UCD020R_H10_BE398302Td02P025F03P012D081R2_066.ab1     1 
Contig length: old 309, new 309

Contig length: old 309, new 309
New start: 0